There is something inherently joyful about rainbow sprinkles. Whether it’s a birthday celebration or just a Tuesday morning, “funfetti” has the power to turn a mundane meal into a celebration. These Funfetti Greek Yogurt Muffins are my go-to recipe when I want something that feels like a treat but packs a bit more nutritional punch than a standard bakery muffin. By utilizing the magic of Greek yogurt, we achieve a crumb that is incredibly moist, tender, and slightly tangy, providing a perfect backdrop for those sweet, crunchy sprinkles.

In this guide, I’ll walk you through how to achieve that bakery-style high dome, the best type of sprinkles to use so the colors don’t bleed, and why this specific ratio of fats—butter and oil—creates the ultimate texture. Get ready to fill your kitchen with the sweet scent of vanilla and the bright colors of a rainbow!
Why You’ll Love This Recipe
You are going to fall in love with these muffins for several reasons. First, the texture is unbeatable. Thanks to the acidity in the Greek yogurt reacting with the baking soda, these muffins rise beautifully and stay soft for days. Second, they are lower in refined fats than traditional muffins, as the yogurt replaces a significant portion of the butter.
Third, they are incredibly versatile. While the kids love them for the “party” look, adults appreciate the balanced sweetness and the subtle protein boost from the yogurt. Plus, they come together in just one or two bowls with no heavy stand mixer required. It’s the perfect recipe for a rainy afternoon or a quick Sunday meal-prep session.
What Is a Funfetti Greek Yogurt Muffin?
A Funfetti Greek Yogurt Muffin is a hybrid between a classic birthday cake and a wholesome breakfast muffin. Traditionally, “Funfetti” refers to a vanilla cake base dotted with multi-colored sprinkles. In this version, we elevate the classic profile by adding Greek yogurt.
The yogurt serves a dual purpose: it acts as a tenderizer for the gluten in the flour, ensuring the muffin isn’t tough, and it adds moisture without the need for excessive oil. The result is a muffin that tastes like a vanilla cupcake but has the structural integrity and “wholesome” feel of a breakfast staple. It’s a “healthier” take on a nostalgic favorite that doesn’t sacrifice flavor.
Ingredients Overview
To get the best results, the quality and type of ingredients you use matter. Here is what you’ll need:
- All-Purpose Flour: This provides the necessary structure. I recommend fluffing your flour with a spoon before measuring to ensure you don’t pack it down, which can lead to dense muffins.
- White Sugar: Granulated sugar provides sweetness and helps in browning.
- Greek Yogurt: Use plain Greek yogurt. Full-fat (5%) or low-fat (2%) works best for moisture. Non-fat works too, but the crumb may be slightly less rich.
- The Fat Blend (Butter & Oil): We use a combination of melted butter for that unmistakable flavor and olive or avocado oil for long-lasting moisture.
- Rainbow Sprinkles: Use “jimmies” (the long ones) rather than nonpareils (the tiny balls). Jimmies hold their shape better and won’t bleed into the batter as easily.
- Baking Soda & Salt: The baking soda is our leavening agent, reacting with the yogurt to create lift. Salt balances the sweetness.
- Egg & Milk: These provide binding and liquid. Ensure they are at room temperature for the smoothest emulsion.
- Vanilla Extract: A heavy hand with vanilla (2 teaspoons) gives these that “cake-batter” flavor we all love.
Ingredient Substitutions & Tips
- Yogurt Substitutes: If you don’t have Greek yogurt, sour cream is a 1:1 substitute that yields an even richer result.
- Flour Alternatives: You can swap 50% of the all-purpose flour for whole wheat pastry flour for added fiber without making the muffins too heavy.
- Oil Options: If you don’t like the taste of olive oil in baking, avocado oil or melted coconut oil are excellent neutral choices.
- Sugar-Free: You can use a monk fruit sweetener or erythritol blend in place of sugar, though the browning might be slightly different.
- Sprinkle Tip: Avoid “natural” dyed sprinkles if you want vibrant colors; they tend to fade significantly during the baking process.
Step-by-Step Instructions
1. Preparation: Start by preheating your oven to 375℉ (190°C). This slightly higher temperature helps the muffins “spring” up quickly, creating a beautiful domed top. Line your 12-cup muffin tin with paper liners or grease them thoroughly.
2. Mix Dry Ingredients: In a large mixing bowl, whisk together the 2 cups of flour, ¾ cup sugar, 1 tsp baking soda, and ½ tsp salt. Whisking not only combines the ingredients but also aerates the flour.
3. Combine Wet Ingredients: In a separate medium bowl, melt the butter. Once melted, whisk in the oil, Greek yogurt, milk, egg, and vanilla. It is important to whisk until the yogurt is fully incorporated and no large lumps remain.
4. The Merge: Pour the wet mixture into the dry ingredients. Use a large rubber spatula to fold the mixture. Stop as soon as you see no more streaks of dry flour. Overmixing at this stage develops gluten, which makes the muffins tough.
5. The Fun Part: Gently fold in the ½ cup of rainbow sprinkles. Do not over-stir, or the colors may begin to streak through the white batter.
6. Filling the Tins: Distribute the batter evenly among the muffin cups. For bakery-style muffins, fill them almost to the top. This recipe makes about 15 muffins, so you may need a second tin or to bake in batches.
7. Bake: Place in the center rack of the oven and bake for 15-17 minutes. At the 15-minute mark, insert a toothpick. If it comes out clean or with just a few moist crumbs, they are ready.
8. Cooling: Let the muffins sit in the tin for 5-10 minutes. This allows the structure to set so they don’t fall apart when you remove them.

Expert Baking Tips
- Don’t Overmix: I cannot stress this enough! Lumpy batter is okay. Smooth batter usually means overmixed muffins.
- Temperature Matters: If your yogurt and egg are cold, they might cause the melted butter to seize up into little clumps. Try to bring your cold ingredients to room temp for 30 minutes before starting.
- The Sprinkle Secret: If you want that “Instagram-perfect” look, press a few extra sprinkles onto the tops of the muffins before they go into the oven.
- Check Your Soda: Ensure your baking soda is fresh. If it’s been open for more than 6 months, your muffins might not get the lift they need.
Special Section: Boosting the Protein
While these muffins already contain Greek yogurt and an egg, you can turn them into a “Power Funfetti” snack easily. Swap 1/4 cup of the flour for a vanilla whey protein powder. If you do this, add an extra tablespoon of milk to ensure the batter doesn’t become too dry.
Another tip for a high-protein breakfast is to serve these muffins split in half with a dollop of extra Greek yogurt on top or a smear of almond butter. This balances the carbohydrates with healthy fats and protein, keeping you full until lunch.
Serving Suggestions
These Funfetti Greek Yogurt Muffins are best served slightly warm. I love serving them with a hot cup of coffee or a cold glass of milk for the kids. If you want to go the extra mile, serve them with a side of fresh strawberries or raspberries—the tartness of the berries cuts through the sweetness of the sprinkles perfectly. They also make a fantastic addition to a brunch spread or a school lunchbox surprise!
Storage & Make-Ahead Tips
- Room Temperature: Store in an airtight container for up to 3 days. To keep them from getting “soggy” on top, place a paper towel in the container to absorb excess moisture.
- Freezing: These freeze beautifully! Wrap individual muffins in plastic wrap and place them in a freezer bag. They stay fresh for up to 3 months.
- Reheating: Microwave a frozen muffin for 20-30 seconds for that “fresh out of the oven” taste.
FAQs
1. Can I use flavored yogurt instead of plain?
Yes! Vanilla Greek yogurt works wonderfully and adds an extra layer of flavor. Just be aware that flavored yogurts often have added sugar, so your muffins will be slightly sweeter.
2. Why did my sprinkles sink to the bottom?
Usually, this happens if the batter is too thin. This batter should be quite thick. Also, using “jimmies” instead of heavy nonpareils helps prevent sinking.
3. Can I make these gluten-free?
Yes, you can substitute the all-purpose flour with a high-quality 1:1 gluten-free baking flour blend (make sure it contains xanthan gum).
4. Can I make mini muffins with this recipe?
Absolutely! Use a mini muffin tin and reduce the baking time to 9-11 minutes.
5. My muffins didn’t rise, what happened?
Check your baking soda’s expiration date. Also, ensure you didn’t overmix the batter, which can pop the air bubbles created by the leavening agent.
Final Thoughts
These Funfetti Greek Yogurt Muffins prove that you don’t need a lot of butter or sugar to create a treat that feels indulgent. They are the perfect balance of moisture, flavor, and whimsy. Whether you’re baking these for a toddler’s birthday or just to brighten your own morning, they are guaranteed to bring a smile to your face. Happy baking, and don’t forget to add extra sprinkles—you deserve them!
PrintFluffy Funfetti Greek Yogurt Muffins
These Funfetti Greek Yogurt Muffins are soft, fluffy, and bursting with rainbow sprinkles! Made with Greek yogurt for extra protein and moisture, they’re a fun and slightly healthier treat that both kids and adults love.
- Prep Time: 15 minutes
- Cook Time: 15 minutes
- Total Time: 40 minutes
- Yield: 15 muffins
- Cuisine: American
Ingredients
2 cups all-purpose flour
¾ cup white sugar
1 tsp baking soda
½ tsp salt
¼ cup butter
¼ cup olive oil or avocado oil
1 cup plain Greek yogurt
½ cup milk (whole, 2% or 1%)
1 egg
2 tsp vanilla extract
½ cup traditional rainbow sprinkles
Instructions
Preheat the oven to 375℉ and prepare your muffin tins by adding muffin liners or spraying with cooking spray.
In a large bowl, add the flour, sugar, baking soda and salt. Whisk until mixed well. Set bowl aside.
In a medium sized bowl, add the butter. Microwave for 20-25 seconds until soft and mostly melted.
Add the oil, Greek yogurt, milk, egg and vanilla extract to the bowl with melted butter. Whisk until well combined.
Pour the wet ingredients into the dry ingredients. Using a spatula, stir until just combined. Add sprinkles and fold gently.
Fill each muffin cup almost full. Top with extra sprinkles if desired.
Bake at 375℉ for 15-17 minutes until a toothpick comes out clean.
Let cool for 5-10 minutes in the tray before removing.
Notes
• Use room temperature egg and milk for a smoother batter.
• Do not overmix the batter once the wet and dry ingredients meet; this ensures a light, fluffy texture.
• If using muffin liners, let the muffins cool completely before peeling to prevent sticking.




